R/Medicine 2023 Virtual Conference has ended

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R/Medicine 2023 Virtual Conference

11:00am EDT

Isoformic: Transcript Level RNA-seq Analysis for Human Data - Izabela Mamede Conceição, Universidade Federal de Minas Gerais; Lucio Rezende Queiroz, Weil Cornell University Zoom Using REDCap and R to Rapidly Produce Biomedical Publications - Raymond R. Balise, Anna Calderon & Tyler Barthomew, Univ. of Miami; Stephan Kadauke, CHOP; Will Beasley, Univ. of Oklahoma Health Sciences Center... Zoom {renv} For Reproducible Analyses - Astrid Lillie Radermacher, Jumping Rivers Zoom

2:00pm EDT

Break

3:00pm EDT

An Introduction to the gt Package - Richard Iannone, Posit Software, PBC Zoom High-Dimensional Propensity Score in Residual Confounding Control in Pharmacoepidemiologic Studies and Relevant Double Robust Extensions - M. Ehsan Karim, The University of British Columbia Zoom Tidy Transcriptomic Analysis of Single-cell and Bulk Data - Stefano Mangiola, WEHI Zoom

11:00am EDT

A Journey From Patchworks to Projects: A Ready-To-Use Project Template To Popularize Reproducible Research Pipelines in Everyday Projects - Corrado Lanera & Andrea Pedot, Unit of Biostatistics, Epidemiology and... Zoom Automated Reporting with Quarto - Mandy Norrbo, Jumping Rivers Zoom Cleaning Medical Data with R - Peter Higgins, University of Michigan; Crystal Lewis, Consultant; Shannon Pileggi, The Prostate Cancer Clinical Trials Consortium Zoom Level Up Your Plots: Using Colour, Text Hierarchy and Annotations to Create Compelling and Memorable Data Visualisations - Cara Thompson, Building Stories with Data Zoom

2:00pm EDT

Break

3:00pm EDT

Creating and Reasoning About Complex Clinical Trial Tables With rtables - Gabriel Becker, Consultant; Adrian Waddell, Genentech Zoom R/Medicine 101: Introduction to Clinical Data Analysis with R - Joy Payton and Stephan Kadauke, Children's Hospital of Philadelphia Zoom

11:00am EDT

Analyzing Clinical and Genomic Oncological Data with {genieBPC} and {gnomeR} - Jessica Lavery, Samantha Brown, Karissa Whiting, Hannah Fuchs, Memorial Sloan Kettering Cancer Center Zoom

12:00pm EDT

A Live Demonstration of the OHDSI PatientLevelPrediction R Package - Jenna M Reps, Janssen RD; Ross Williams, Department of Medical Informatics, Erasmus MC Zoom

1:00pm EDT

Break

2:00pm EDT

Machine Learning for Risk Prediction using Oblique Random Survival Forests - Byron Casey Jaeger, Wake Forest University School of Medicine Zoom

3:00pm EDT

predictNMB: An R Package To Estimate if or When a Clinical Prediction Model Is Worthwhile - Rex Parsons, Queensland University of Technology Zoom

4:00pm EDT

From One Report, Many: Using Parameterized Reporting to Generate Dozens, Hundreds, or Thousands of Reports at the Same Time - David Keyes, R for the Rest of Us Zoom

5:00pm EDT

A Shiny App for Analyzing Gait Data From the X-Sens IMU System: Integration With SPM1D Statistical Analysis - Zhexuan Gu & Patrick Kwong, The Hong Kong Polytechnic University SpatialChat - Poster Session Room 1 An Accurate Estimation of Patient Death from Two Competing Events - Daniel D Sjoberg, Prostate Cancer Clinical Trials Consortium SpatialChat - Poster Session Room 1 An R Package for Estimating Sample Sizes for Multi-Reader Multi-Case Studies - Dennis Robert, Qure.ai SpatialChat - Poster Session Room 1 Facilitating reproducible and open research with workflowr and workflowr.io - John Blischak, JDB Software Consulting, LLC SpatialChat - Poster Session Room 2 Promoting Health Awareness Through Data Transparency - Andrew Pham & Winnie Gong, Asian Pacific Health Foundation SpatialChat - Poster Session Room 2 redcapAPI: Analysis-Ready Data Retrieval from REDCap with Advanced Processing Capabilities in R - Savannah Obregon, Vanderbilt University Medical Center SpatialChat - Poster Session Room 2

6:00pm EDT

Job Fair Spatial Chat

7:00pm EDT

Tan "TidyTuesdays" Medical Data! - Tan Ho, Zelus Analytics Twitch

11:00am EDT

Opening Remarks - Peter Higgins, University of Michigan Zoom

11:15am EDT

Keynote: Expanding R Use in Applied Epidemiology and Public Health - Neale Batra, President, Applied Epi Zoom

12:15pm EDT

Developing an R Shiny Interactive Dashboard to Increase Interpretability of Data: Medical Residency Statistics Over Time - Christian Lee, Anne Burnett School of Medicine at Texas Christian University Zoom

12:27pm EDT

Clinical Trials Reporting Dashboard - Kaitlin Maciejewski & Jesse Reynolds, Yale Center for Analytical Sciences Zoom

12:39pm EDT

Clinical Management Dashboard for the Hospital Clínico De Magallanes - Juan Francisco Venegas Gutierrez, Universidad San Sebastian; Anastasia Verenice Rebolledo Renner, Universidad Austral de Chile Zoom

1:00pm EDT

Shiny Developer Series Livestream - Creating a New Shiny App Exploring the Licorice Gargle Clinical Study! - Eric Nantz, The R-Podcast & Eli Lilly and Company Twitch

1:45pm EDT

Break

2:00pm EDT

Building a Dataviz Design System for a Medical Research Project - Cara Thompson, Building Stories with Data Zoom

2:12pm EDT

StoryboardR: an R package and Shiny application designed to visualize real-world data from clinical patient registries - David Michael Miller and Sophia Z. Shalhout, Massachusetts General Hospital Zoom

2:34pm EDT

rtables - Leveraging Data Visualization Concepts To Declare And Create Clinical Trial Tables - Gabriel Becker, Consultant Zoom

2:56pm EDT

Seamless data-driven reporting with {epoxy} - Garrick Aden-Buie, Posit Software, PBC Zoom

3:16pm EDT

Break

3:31pm EDT

Automated Data Quality Assessments for Observational Studies with dataquieR - Elisa Kasbohm & Joany Mariño, University Medicine Greifswald Zoom

3:53pm EDT

Streamlining and Automation: Simplify Your App and Simplify Your Life - Russ Hyde, Jumping Rivers Zoom

4:15pm EDT

CAR-T Cell Clinical Trial Analytics at CHOP: From REDCap to R/Shiny with REDCapTidieR - Stephan Kadauke & Rich Hanna, Children's Hospital of Philadelphia Zoom

4:37pm EDT

Project NeLL™: A Tool for Educating Nurse Scientists for the Age of Information - Vicki Stover Hertzberg, Emory University Zoom

4:59pm EDT

Closing Remarks - Steven Schwager, Cornell University Zoom

11:00am EDT

Opening Remarks - Peter Higgins, University of Michigan Zoom

11:15am EDT

Keynote: DataTrail and its Extensions – How You Can Build a Local Pipeline of Talent for Your Medical Center - Jeff Leek, Chief Data Officer, Vice President, and J Orin Edson Foundation Chair of Biostatistics... Zoom

12:15pm EDT

How Open Source and R/Shiny are Transforming Pharma - André Veríssimo, Appsilon Zoom

12:37pm EDT

Sample Size Calculation and Evaluation of Progression Criteria in Pilot and Feasibility Studies: A New App (SS-PROGRESS) - Kieran Bromley, Keele University, UK Zoom

12:49pm EDT

An Introduction to Projection Predictive Variable Selection - Frank Weber, Rostock University Medical Center Zoom

1:11pm EDT

Using Machine Learning in R To Create Machine Learning Models With Clinical Data - Wesley Wilson, University of Pennsylvania Zoom

1:21pm EDT

Break

1:36pm EDT

AI, EHRs, and Ethics: Charting the Course - Stephan Kadauke, CHOP; Nigam Shah, Stanford University & Stanford Healthcare; Karandeep Singh and Jodyn Platt, Univ of Michigan; Amy Sitapati, UCSD Zoom

2:08pm EDT

geneExpressionFromGEO: An R Package to Facilitate Data Reading from Gene Expression Omnibus (GEO) - Davide Chicco, University of Toronto Zoom

2:20pm EDT

simulomicsr: A R package for generating reliable transcriptomics, proteomics, and metabolomics simulated data using a generative AI model - Luca Vedovelli, University of Padova Zoom

2:32pm EDT

Midas: An R package for the reproducible processing, quality control, and reporting of targeted small molecule mass spectrometry data - Bo Burla, National University of Singapore Zoom

2:52pm EDT

Break

3:07pm EDT

The Value of Internal R Packages in Healthcare - Daniel Sjoberg and Shannon McClintock Pileggi, Prostate Cancer Clinical Trials Consortium; Joe Roberts, Posit; Doug Kelkhoff, Roche; Athanasia Monika Mowinckel, University... Zoom

3:39pm EDT

Blood Culture Contamination Rate Tracking and Reporting - Rebecca Ramesh, Penn Medicine Zoom

3:51pm EDT

Using {tidymodels} to Detect Heart Murmurs - Nicola Rennie, Lancaster University Zoom

4:13pm EDT

All of Us Research Program: Opportunities for Clinicians Using R - Caitlin Dreisbach, University of Rochester; Theresa Koleck, University of Pittsburgh Zoom

4:35pm EDT

Dengue Data Hub: A Centralized Repository for Dengue-related Data - Thiyanga Shamini Talagala, University of Sri Jayewardenepura, Sri Lanka Zoom

4:57pm EDT

An Innovative Framework for Growth Reference Among Very Preterm Infants - Fu-Sheng Chou, Kaiser Permanente Riverside Medical Center Zoom

5:19pm EDT

Closing Remarks - Stephan Kadauke, CHOP Zoom